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PPOPP
2006
ACM
13 years 10 months ago
Performance characterization of molecular dynamics techniques for biomolecular simulations
Large-scale simulations and computational modeling using molecular dynamics (MD) continues to make significant impacts in the field of biology. It is well known that simulations...
Sadaf R. Alam, Jeffrey S. Vetter, Pratul K. Agarwa...
P2P
2003
IEEE
205views Communications» more  P2P 2003»
13 years 10 months ago
Peer-to-Peer Spatial Queries in Sensor Networks
Sensor networks, that consist of potentially several thousands of nodes each with sensing (heat, sound, light, magnetism, etc.) and wireless communication capabilities, provide gr...
Murat Demirbas, Hakan Ferhatosmanoglu
IPPS
2006
IEEE
13 years 10 months ago
Techniques and tools for dynamic optimization
Traditional code optimizers have produced significant performance improvements over the past forty years. While promising avenues of research still exist, traditional static and p...
Jason Hiser, Naveen Kumar, Min Zhao, Shukang Zhou,...
BMCBI
2007
157views more  BMCBI 2007»
13 years 4 months ago
Constructing gene co-expression networks and predicting functions of unknown genes by random matrix theory
Background: Large-scale sequencing of entire genomes has ushered in a new age in biology. One of the next grand challenges is to dissect the cellular networks consisting of many i...
Feng Luo, Yunfeng Yang, Jianxin Zhong, Haichun Gao...
CLUSTER
2007
IEEE
13 years 11 months ago
Balancing productivity and performance on the cell broadband engine
— The Cell Broadband Engine (BE) is a heterogeneous multicore processor, combining a general-purpose POWER architecture core with eight independent single-instructionmultiple-dat...
Sadaf R. Alam, Jeremy S. Meredith, Jeffrey S. Vett...