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» Practical Compressed Suffix Trees
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VLDB
2005
ACM
132views Database» more  VLDB 2005»
14 years 4 months ago
Practical methods for constructing suffix trees
Yuanyuan Tian, Sandeep Tata, Richard A. Hankins, J...
RECOMB
2009
Springer
14 years 5 months ago
Storage and Retrieval of Individual Genomes
A repetitive sequence collection is one where portions of a base sequence of length n are repeated many times with small variations, forming a collection of total length N. Example...
Gonzalo Navarro, Jouni Sirén, Niko Väl...
CIKM
2009
Springer
13 years 8 months ago
Suffix trees for very large genomic sequences
A suffix tree is a fundamental data structure for string searching algorithms. Unfortunately, when it comes to the use of suffix trees in real-life applications, the current metho...
Marina Barsky, Ulrike Stege, Alex Thomo, Chris Upt...
ICML
2006
IEEE
14 years 5 months ago
Fast and space efficient string kernels using suffix arrays
String kernels which compare the set of all common substrings between two given strings have recently been proposed by Vishwanathan & Smola (2004). Surprisingly, these kernels...
Choon Hui Teo, S. V. N. Vishwanathan
ESA
1998
Springer
169views Algorithms» more  ESA 1998»
13 years 9 months ago
Augmenting Suffix Trees, with Applications
Information retrieval and data compression are the two main application areas where the rich theory of string algorithmics plays a fundamental role. In this paper, we consider one ...
Yossi Matias, S. Muthukrishnan, Süleyman Cenk...