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    BMCBI
    2005
    201views more  BMCBI 2005»
    Principal component analysis for predicting transcription-factor binding motifs from array-derived data
    13 years 4 months ago
    Principal component analysis for predicting transcription-factor binding motifs from array-derived data
    Download  www.biomedcentral.com
    Background: The responses to interleukin 1 (IL-1) in human chondrocytes constitute a complex regulatory mechanism, where multiple transcription factors interact combinatorially to...
    Yunlong Liu, Matthew P. Vincenti, Hiroki Yokota
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    CSB
    2005
    IEEE
    125views Bioinformatics» more  CSB 2005»
    Discriminative Discovery of Transcription Factor Binding Sites from Location Data
    13 years 10 months ago
    Discriminative Discovery of Transcription Factor Binding Sites from Location Data
    Download  conferences.computer.org
    Motivation: The availability of genome-wide location analyses based on chromatin immunoprecipitation (ChIP) data gives a new insight for in silico analysis of transcriptional regu...
    Yuji Kawada, Yasubumi Sakakibara
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    BMCBI
    2007
    148views more  BMCBI 2007»
    fREDUCE: Detection of degenerate regulatory elements using correlation with expression
    13 years 4 months ago
    fREDUCE: Detection of degenerate regulatory elements using correlation with expression
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    Background: The precision of transcriptional regulation is made possible by the specificity of physical interactions between transcription factors and their cognate binding sites ...
    Randy Z. Wu, Christina Chaivorapol, Jiashun Zheng,...
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    BMCBI
    2008
    126views more  BMCBI 2008»
    c-REDUCE: Incorporating sequence conservation to detect motifs that correlate with expression
    13 years 4 months ago
    c-REDUCE: Incorporating sequence conservation to detect motifs that correlate with expression
    Download  www.biomedcentral.com
    Background: Computational methods for characterizing novel transcription factor binding sites search for sequence patterns or "motifs" that appear repeatedly in genomic ...
    Katerina Kechris, Hao Li
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    BMCBI
    2007
    148views more  BMCBI 2007»
    WeederH: an algorithm for finding conserved regulatory motifs and regions in homologous sequences
    13 years 4 months ago
    WeederH: an algorithm for finding conserved regulatory motifs and regions in homologous sequences
    Download  www.biomedcentral.com
    Background: This work addresses the problem of detecting conserved transcription factor binding sites and in general regulatory regions through the analysis of sequences from homo...
    Giulio Pavesi, Federico Zambelli, Graziano Pesole
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