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» Problems on RNA Secondary Structure Prediction and Design
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METMBS
2004
196views Mathematics» more  METMBS 2004»
13 years 7 months ago
An Open Problem in RNA Secondary Structure Prediction by the Comparative Approach
Abstract One approach to predict the secondary structure of RNA is the comparative approach. This approach is used when alignment of several homologous sequences of a RNA is availa...
Stefan Engelen, Fariza Tahi
BMCBI
2008
142views more  BMCBI 2008»
13 years 5 months ago
RNA STRAND: The RNA Secondary Structure and Statistical Analysis Database
Background: The ability to access, search and analyse secondary structures of a large set of known RNA molecules is very important for deriving improved RNA energy models, for eva...
Mirela Andronescu, Vera Bereg, Holger H. Hoos, Ann...
CSB
2004
IEEE
208views Bioinformatics» more  CSB 2004»
13 years 9 months ago
Pair Stochastic Tree Adjoining Grammars for Aligning and Predicting Pseudoknot RNA Structures
Motivation: Since the whole genome sequences for many species are currently available, computational predictions of RNA secondary structures and computational identifications of t...
Hiroshi Matsui, Kengo Sato, Yasubumi Sakakibara
BMCBI
2008
116views more  BMCBI 2008»
13 years 5 months ago
A novel representation of RNA secondary structure based on element-contact graphs
Background: Depending on their specific structures, noncoding RNAs (ncRNAs) play important roles in many biological processes. Interest in developing new topological indices based...
Wenjie Shu, Xiaochen Bo, Zhiqiang Zheng, Shengqi W...
AAIM
2007
Springer
145views Algorithms» more  AAIM 2007»
13 years 12 months ago
Improved Approximation Algorithms for Predicting RNA Secondary Structures with Arbitrary Pseudoknots
We study three closely related problems motivated by the prediction of RNA secondary structures with arbitrary pseudoknots: the MAXIMUM BASE PAIR STACKINGS problem proposed by Ieon...
Minghui Jiang