We present an optimized parallelization scheme for molecular dynamics simulations of large biomolecular systems, implemented in the production-quality molecular dynamics program N...
Robert Brunner, James C. Phillips, Laxmikant V. Ka...
In a previous paper, we developed an algebraic theory of threads, interleaving of threads, and interaction between threads and services. In the current paper, we extend that theory...
The Cell processor offers substantial computational power which can be effectively utilized only if application design and implementation are tuned to the Cell architecture. In th...
Abstract. Clusters of PCs are an attractive platform for parallel applications because of their cost effectiveness. We have implemented an interoperable runtime system called Conve...
Background: High-throughput genome biological experiments yield large and multifaceted datasets that require flexible and user-friendly analysis tools to facilitate their interpre...