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» Programming in Biomolecular Computation
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GI
2009
Springer
13 years 2 months ago
Implementation of an effective non-bonded interactions kernel for biomolecular simulations on the Cell processor
Abstract: In biomolecular simulations intensive computations are spent in nonbonded interactions kernels, i.e., electrostatic interactions. Therefore this part can be considered as...
Horacio Emilio Pérez Sánchez, Wolfga...
ENTCS
2010
96views more  ENTCS 2010»
13 years 2 months ago
Programming in Biomolecular Computation
Our goal is to provide a top-down approach to biomolecular computation. In spite of widespread discussion about connections between biology and computation, one question seems not...
Lars Hartmann, Neil D. Jones, Jakob Grue Simonsen
APBC
2003
117views Bioinformatics» more  APBC 2003»
13 years 6 months ago
A New Program to Compute the Surface Properties of Biomolecules
The interactions of large molecules with surfaces and with each other are strongly dependent upon their surface, rather than their bulk properties. In addition, the local properti...
Dan V. Nicolau Jr., Florin Fulga, Dan V. Nicolau
DNA
2009
Springer
158views Bioinformatics» more  DNA 2009»
13 years 11 months ago
Design of a Biomolecular Device That Executes Process Algebra
Process algebras are widely used for defining the formal semantics of concurrent communicating processes. In process algebra, concurrent processes can be specified to execute di...
Urmi Majumder, John H. Reif
SC
2000
ACM
13 years 9 months ago
Scalable Molecular Dynamics for Large Biomolecular Systems
We present an optimized parallelization scheme for molecular dynamics simulations of large biomolecular systems, implemented in the production-quality molecular dynamics program N...
Robert Brunner, James C. Phillips, Laxmikant V. Ka...