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» Progressive multiple sequence alignments from triplets
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PAM
2010
Springer
14 years 9 days ago
Toward Topology Dualism: Improving the Accuracy of AS Annotations for Routers
Abstract. To describe, analyze, and model the topological and structural characteristics of the Internet, researchers use Internet maps constructed at the router or autonomous syst...
Bradley Huffaker, Amogh Dhamdhere, Marina Fomenkov...
ALMOB
2006
155views more  ALMOB 2006»
13 years 5 months ago
Refining motifs by improving information content scores using neighborhood profile search
The main goal of the motif finding problem is to detect novel, over-represented unknown signals in a set of sequences (e.g. transcription factor binding sites in a genome). The mo...
Chandan K. Reddy, Yao-Chung Weng, Hsiao-Dong Chian...
IPPS
2010
IEEE
13 years 3 months ago
Hybrid MPI/Pthreads parallelization of the RAxML phylogenetics code
Abstract--A hybrid MPI/Pthreads parallelization was implemented in the RAxML phylogenetics code. New MPI code was added to the existing Pthreads production code to exploit parallel...
Wayne Pfeiffer, Alexandros Stamatakis
PLDI
2004
ACM
13 years 11 months ago
Min-cut program decomposition for thread-level speculation
With billion-transistor chips on the horizon, single-chip multiprocessors (CMPs) are likely to become commodity components. Speculative CMPs use hardware to enforce dependence, al...
Troy A. Johnson, Rudolf Eigenmann, T. N. Vijaykuma...
CASES
2006
ACM
13 years 9 months ago
Reaching fast code faster: using modeling for efficient software thread integration on a VLIW DSP
When integrating software threads together to boost performance on a processor with instruction-level parallel processing support, it is rarely clear which code regions should be ...
Won So, Alexander G. Dean