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» Promoter Prediction Using Physico-Chemical Properties of DNA
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ICML
2009
IEEE
14 years 6 months ago
Boosting with structural sparsity
Despite popular belief, boosting algorithms and related coordinate descent methods are prone to overfitting. We derive modifications to AdaBoost and related gradient-based coordin...
John Duchi, Yoram Singer
BMCBI
2006
129views more  BMCBI 2006»
13 years 5 months ago
BIPAD: A web server for modeling bipartite sequence elements
Background: Many dimeric protein complexes bind cooperatively to families of bipartite nucleic acid sequence elements, which consist of pairs of conserved half-site sequences sepa...
Chengpeng Bi, Peter K. Rogan
BMCBI
2008
200views more  BMCBI 2008»
13 years 5 months ago
Defining functional distances over Gene Ontology
Background: A fundamental problem when trying to define the functional relationships between proteins is the difficulty in quantifying functional similarities, even when well-stru...
Angela del Pozo, Florencio Pazos, Alfonso Valencia
KES
2008
Springer
13 years 5 months ago
Downsizing Multigenic Predictors of the Response to Preoperative Chemotherapy in Breast Cancer
We present a method for designing efficient multigenic predictors with few probes and its application to the prediction of the response to preoperative chemotherapy in breast cance...
René Natowicz, Roberto Incitti, Roman Rouzi...
EMSOFT
2004
Springer
13 years 10 months ago
A metrics system for quantifying operational coupling in embedded computer control systems
One central issue in system structuring and quality prediction is the interdependencies of system modules. This paper proposes a novel technique for determining the operational co...
De-Jiu Chen, Martin Törngren