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    JCB
    2006
    82views more  JCB 2006»
    Protein Multiple Alignment Incorporating Primary and Secondary Structure Information
    13 years 4 months ago
    Protein Multiple Alignment Incorporating Primary and Secondary Structure Information
    Download  www.stat.purdue.edu
    Nak-Kyeong Kim, Jun Xie
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    ICML
    2004
    IEEE
    122views Machine Learning» more  ICML 2004»
    A graphical model for protein secondary structure prediction
    14 years 5 months ago
    A graphical model for protein secondary structure prediction
    Download  www.gatsby.ucl.ac.uk
    In this paper, we present a graphical model for protein secondary structure prediction. This model extends segmental semi-Markov models (SSMM) to exploit multiple sequence alignme...
    Wei Chu, Zoubin Ghahramani, David L. Wild
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    BMCBI
    2008
    140views more  BMCBI 2008»
    Improved accuracy of multiple ncRNA alignment by incorporating structural information into a MAFFT-based framework
    13 years 4 months ago
    Improved accuracy of multiple ncRNA alignment by incorporating structural information into a MAFFT-based framework
    Download  www.biomedcentral.com
    Background: Structural alignment of RNAs is becoming important, since the discovery of functional non-coding RNAs (ncRNAs). Recent studies, mainly based on various approximations ...
    Kazutaka Katoh, Hiroyuki Toh
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    BMCBI
    2006
    129views more  BMCBI 2006»
    Improved alignment quality by combining evolutionary information, predicted secondary structure and self-organizing maps
    13 years 4 months ago
    Improved alignment quality by combining evolutionary information, predicted secondary structure and self-organizing maps
    Download  www.biomedcentral.com
    Background: Protein sequence alignment is one of the basic tools in bioinformatics. Correct alignments are required for a range of tasks including the derivation of phylogenetic t...
    Tomas Ohlson, Varun Aggarwal, Arne Elofsson, Rober...
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    BCB
    2010
    125views Bioinformatics» more  BCB 2010»
    Protein structure alignment using elastic shape analysis
    12 years 11 months ago
    Protein structure alignment using elastic shape analysis
    Download  www.stat.fsu.edu
    In this paper we present a method for flexible protein structure alignment based on elastic shape analysis of backbones, in a manner that can incorporate different characteristics...
    Wei Liu, Anuj Srivastava, Jinfeng Zhang
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