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    JCB
    2006
    82views more  JCB 2006»
    Protein Multiple Alignment Incorporating Primary and Secondary Structure Information
    13 years 5 months ago
    Protein Multiple Alignment Incorporating Primary and Secondary Structure Information
    Download  www.stat.purdue.edu
    Nak-Kyeong Kim, Jun Xie
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    ICML
    2004
    IEEE
    122views Machine Learning» more  ICML 2004»
    A graphical model for protein secondary structure prediction
    14 years 5 months ago
    A graphical model for protein secondary structure prediction
    Download  www.gatsby.ucl.ac.uk
    In this paper, we present a graphical model for protein secondary structure prediction. This model extends segmental semi-Markov models (SSMM) to exploit multiple sequence alignme...
    Wei Chu, Zoubin Ghahramani, David L. Wild
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    BMCBI
    2008
    140views more  BMCBI 2008»
    Improved accuracy of multiple ncRNA alignment by incorporating structural information into a MAFFT-based framework
    13 years 5 months ago
    Improved accuracy of multiple ncRNA alignment by incorporating structural information into a MAFFT-based framework
    Download  www.biomedcentral.com
    Background: Structural alignment of RNAs is becoming important, since the discovery of functional non-coding RNAs (ncRNAs). Recent studies, mainly based on various approximations ...
    Kazutaka Katoh, Hiroyuki Toh
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    BMCBI
    2006
    129views more  BMCBI 2006»
    Improved alignment quality by combining evolutionary information, predicted secondary structure and self-organizing maps
    13 years 5 months ago
    Improved alignment quality by combining evolutionary information, predicted secondary structure and self-organizing maps
    Download  www.biomedcentral.com
    Background: Protein sequence alignment is one of the basic tools in bioinformatics. Correct alignments are required for a range of tasks including the derivation of phylogenetic t...
    Tomas Ohlson, Varun Aggarwal, Arne Elofsson, Rober...
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    BCB
    2010
    125views Bioinformatics» more  BCB 2010»
    Protein structure alignment using elastic shape analysis
    13 years 8 hour ago
    Protein structure alignment using elastic shape analysis
    Download  www.stat.fsu.edu
    In this paper we present a method for flexible protein structure alignment based on elastic shape analysis of backbones, in a manner that can incorporate different characteristics...
    Wei Liu, Anuj Srivastava, Jinfeng Zhang
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