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» QOMA2: Optimizing the alignment of many sequences
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ICDM
2007
IEEE
227views Data Mining» more  ICDM 2007»
13 years 11 months ago
Optimal Subsequence Bijection
We consider the problem of elastic matching of sequences of real numbers. Since both a query and a target sequence may be noisy, i.e., contain some outlier elements, it is desirab...
Longin Jan Latecki, Qiang Wang, Suzan Koknar-Tezel...
BMCBI
2008
142views more  BMCBI 2008»
13 years 5 months ago
Strategies for measuring evolutionary conservation of RNA secondary structures
Background: Evolutionary conservation of RNA secondary structure is a typical feature of many functional non-coding RNAs. Since almost all of the available methods used for predic...
Andreas R. Gruber, Stephan H. F. Bernhart, Ivo L. ...

Publication
303views
12 years 3 months ago
Evolutionary synthesis of analog networks
he significant increase in the available computational power that took place in recent decades has been accompanied by a growing interest in the application of the evolutionary ap...
Claudio Mattiussi
NAR
2007
113views more  NAR 2007»
13 years 4 months ago
The UCSC genome browser database: update 2007
The University of California, Santa Cruz Genome Browser Database contains, as of September 2006, sequence and annotation data for the genomes of 13 vertebrate and 19 invertebrate ...
Robert M. Kuhn, Donna Karolchik, Ann S. Zweig, Hea...
IPPS
2010
IEEE
13 years 2 months ago
Hybrid MPI/Pthreads parallelization of the RAxML phylogenetics code
Abstract--A hybrid MPI/Pthreads parallelization was implemented in the RAxML phylogenetics code. New MPI code was added to the existing Pthreads production code to exploit parallel...
Wayne Pfeiffer, Alexandros Stamatakis