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» Quantitative and Probabilistic Modeling in Pathway Logic
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ISMB
1998
13 years 7 months ago
BioSim: A New Qualitative Simulation Environment for Molecular Biology
Traditionally, biochemical systems are modelled usingkinetics anddifferential equationsin a quantitative simulator. However,for manybiological processes detailed quantitative info...
Karsten R. Heidtke, Steffen Schulze-Kremer
QEST
2007
IEEE
14 years 2 days ago
Stochastic Game Logic
Stochastic game logic (SGL) is a new temporal logic that combines features of alternating temporal logic (to formalize the individual views and cooperation and reaction facilities...
Christel Baier, Tomás Brázdil, Marcu...
FORMATS
2004
Springer
13 years 11 months ago
Symbolic Model Checking for Probabilistic Timed Automata
Probabilistic timed automata are timed automata extended with discrete probability distributions, and can be used to model timed randomised protocols or faulttolerant systems. We ...
Marta Z. Kwiatkowska, Gethin Norman, Jeremy Sprost...
LMCS
2006
87views more  LMCS 2006»
13 years 5 months ago
Model Checking Probabilistic Pushdown Automata
We consider the model checking problem for probabilistic pushdown automata (pPDA) and properties expressible in various probabilistic logics. We start with properties that can be ...
Antonín Kucera, Javier Esparza, Richard May...
ENTCS
2010
103views more  ENTCS 2010»
13 years 3 months ago
A Model and Analysis of the AKAP Scaffold
We study the biochemical processes involved in scaffold-mediated crosstalk between the cAMP and the Raf-1/MEK/ERK pathways. We model the system by a continuous time Markov chain w...
Oana Andrei, Muffy Calder