Sciweavers

20 search results - page 2 / 4
» RNA Multiple Structural Alignment with Longest Common Subseq...
Sort
View
SPIRE
2007
Springer
13 years 11 months ago
Generalized LCS
The Longest Common Subsequence (LCS) is a well studied problem, having a wide range of implementations. Its motivation is in comparing strings. It has long been of interest to dev...
Amihood Amir, Tzvika Hartman, Oren Kapah, B. Riva ...
BMCBI
2006
121views more  BMCBI 2006»
13 years 5 months ago
Evaluation of sequence alignments and oligonucleotide probes with respect to three-dimensional structure of ribosomal RNA using
Background: Availability of high-resolution RNA crystal structures for the 30S and 50S ribosomal subunits and the subsequent validation of comparative secondary structure models h...
Yadhu Kumar, Ralf Westram, Peter Kipfer, Harald Me...
BMCBI
2008
140views more  BMCBI 2008»
13 years 5 months ago
Improved accuracy of multiple ncRNA alignment by incorporating structural information into a MAFFT-based framework
Background: Structural alignment of RNAs is becoming important, since the discovery of functional non-coding RNAs (ncRNAs). Recent studies, mainly based on various approximations ...
Kazutaka Katoh, Hiroyuki Toh
ICASSP
2011
IEEE
12 years 9 months ago
Iterative estimation of structures of multiple RNA homologs: Turbofold
TurboFold, an iterative algorithm for estimating the common secondary structures of multiple RNA homologs, is presented. The algorithm is motivated by and has structure and attrib...
Gaurav Sharma, Arif Ozgun Harmanci, David H. Mathe...
WABI
2005
Springer
120views Bioinformatics» more  WABI 2005»
13 years 10 months ago
Multiple Structural RNA Alignment with Lagrangian Relaxation
In contrast to proteins, many classes of functionally related RNA molecules show a rather weak sequence conservation but instead a fairly well conserved secondary structure. Hence ...
Markus Bauer, Gunnar W. Klau, Knut Reinert