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» RNA Pseudoknot Prediction Using Term Rewriting
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JUCS
2006
141views more  JUCS 2006»
13 years 6 months ago
Constraint Based Methods for Biological Sequence Analysis
: The need for processing biological information is rapidly growing, owing to the masses of new information in digital form being produced at this time. Old methodologies for proce...
Maryam Bavarian, Verónica Dahl
BMCBI
2006
116views more  BMCBI 2006»
13 years 6 months ago
Optimized mixed Markov models for motif identification
Background: Identifying functional elements, such as transcriptional factor binding sites, is a fundamental step in reconstructing gene regulatory networks and remains a challengi...
Weichun Huang, David M. Umbach, Uwe Ohler, Leping ...
BMCBI
2008
193views more  BMCBI 2008»
13 years 6 months ago
Missing value imputation for microarray gene expression data using histone acetylation information
Background: It is an important pre-processing step to accurately estimate missing values in microarray data, because complete datasets are required in numerous expression profile ...
Qian Xiang, Xianhua Dai, Yangyang Deng, Caisheng H...
ICDT
2010
ACM
147views Database» more  ICDT 2010»
13 years 9 months ago
Querying Parse Trees of Stochastic Context-Free Grammars
Stochastic context-free grammars (SCFGs) have long been recognized as useful for a large variety of tasks including natural language processing, morphological parsing, speech reco...
Sara Cohen, Benny Kimelfeld
ECML
2006
Springer
13 years 9 months ago
Learning Stochastic Tree Edit Distance
Trees provide a suited structural representation to deal with complex tasks such as web information extraction, RNA secondary structure prediction, or conversion of tree structured...
Marc Bernard, Amaury Habrard, Marc Sebban