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» Randomized Algorithms for Motif Detection
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BMCBI
2007
179views more  BMCBI 2007»
9 years 5 months ago
rMotifGen: random motif generator for DNA and protein sequences
Background: Detection of short, subtle conserved motif regions within a set of related DNA or amino acid sequences can lead to discoveries about important regulatory domains such ...
Eric C. Rouchka, C. Timothy Hardin
ISAAC
2004
Springer
115views Algorithms» more  ISAAC 2004»
9 years 11 months ago
Randomized Algorithms for Motif Detection
Motivation: Motif detection for DNA sequences has many important applications in biological studies, e.g., locating binding sites and regulatory signals, and designing genetic prob...
Lusheng Wang, Liang Dong, Hui Fan
WABI
2005
Springer
143views Bioinformatics» more  WABI 2005»
9 years 11 months ago
A Faster Algorithm for Detecting Network Motifs
Motifs in a network are small connected subnetworks that occur in signi´Čücantly higher frequencies than in random networks. They have recently gathered much attention as a useful ...
Sebastian Wernicke
TSP
2008
91views more  TSP 2008»
9 years 5 months ago
A Sequential Monte Carlo Method for Motif Discovery
We propose a sequential Monte Carlo (SMC)-based motif discovery algorithm that can efficiently detect motifs in datasets containing a large number of sequences. The statistical di...
Kuo-ching Liang, Xiaodong Wang, Dimitris Anastassi...
IJCSS
2000
92views more  IJCSS 2000»
9 years 5 months ago
Genetic algorithms and extraction of rules for detection of short DNA motifs
The paper presents a method for discovery of speci
P. Y. Tabakov, Vladimir B. Bajic
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