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STOC
1997
ACM
125views Algorithms» more  STOC 1997»
13 years 9 months ago
An Interruptible Algorithm for Perfect Sampling via Markov Chains
For a large class of examples arising in statistical physics known as attractive spin systems (e.g., the Ising model), one seeks to sample from a probability distribution π on an...
James Allen Fill
RECOMB
1999
Springer
13 years 9 months ago
Classifying proteins by family using the product of correlated p-values
An important goal in bioinformatics is determining the homology and function of proteins from their sequences. Pairwise sequence similarity algorithms are often employed for this ...
Timothy L. Bailey, William Noble Grundy
NIXDORF
1992
116views Hardware» more  NIXDORF 1992»
13 years 8 months ago
Programmable Active Memories: A Performance Assessment
We present some quantitative performance measurements for the computing power of Programmable Active Memories (PAM), as introduced by [2]. Based on Field Programmable Gate Array (...
Patrice Bertin, Didier Roncin, Jean Vuillemin
BMCBI
2011
12 years 8 months ago
Proteinortho: Detection of (Co-)Orthologs in Large-Scale Analysis
Background: Orthology analysis is an important part of data analysis in many areas of bioinformatics such as comparative genomics and molecular phylogenetics. The ever-increasing ...
Marcus Lechner, Sven Findeiß, Lydia Steiner,...
BMCBI
2010
173views more  BMCBI 2010»
13 years 4 months ago
The Yeast Resource Center Public Image Repository: A large database of fluorescence microscopy images
Background: There is increasing interest in the development of computational methods to analyze fluorescent microscopy images and enable automated large-scale analysis of the subc...
Michael Riffle, Trisha N. Davis