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» Reactome: a database of reactions, pathways and biological p...
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NAR
2011
209views Computer Vision» more  NAR 2011»
12 years 8 months ago
REPAIRtoire - a database of DNA repair pathways
REPAIRtoire is the first comprehensive database resource for systems biology of DNA damage and repair. The database collects and organizes the following types of information: (i) ...
Kaja Milanowska, Joanna Krwawicz, Grzegorz Papaj, ...
BMCBI
2005
156views more  BMCBI 2005»
13 years 5 months ago
A new dynamical layout algorithm for complex biochemical reaction networks
Background: To study complex biochemical reaction networks in living cells researchers more and more rely on databases and computational methods. In order to facilitate computatio...
Katja Wegner, Ursula Kummer
GG
2004
Springer
13 years 11 months ago
Analysis of Metabolic Pathways by Graph Transformation
Biochemical pathways, such as metabolic, regulatory, and signal transduction pathways, constitute complex networks of functional and physical interactions between molecular species...
Francesc Rosselló, Gabriel Valiente
OWLED
2008
13 years 6 months ago
Situational Modeling: Defining Molecular Roles in Biochemical Pathways and Reactions
Central to a coherent understanding of cellular biology is a faithful representation of biochemical processes as it pertains to its molecular participants. Current representations ...
Michel Dumontier
BIBM
2007
IEEE
144views Bioinformatics» more  BIBM 2007»
13 years 11 months ago
Kinetic Modeling Using BioPAX Ontology
Thousands of biochemical interactions are available for download from curated databases such as Reactome, Pathway Interaction Database and other sources in the Biological Pathways...
Oliver Ruebenacker, Ion I. Moraru, James C. Schaff...