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RECOMB
2006
Springer
10 years 11 days ago
A Probabilistic Model for Gene Content Evolution with Duplication, Loss, and Horizontal Transfer
We introduce a Markov model for the evolution of a gene family along a phylogeny. The model includes parameters for the rates of horizontal gene transfer, gene duplication, and gen...
István Miklós, Miklós Csü...
RECOMB
2010
Springer
8 years 10 months ago
An Efficient Algorithm for Gene/Species Trees Parsimonious Reconciliation with Losses, Duplications and Transfers
(Motivation) Tree reconciliation is an approach that explains the discrepancies between two evolutionary trees by a number of events such as speciations, duplications, transfers an...
Jean-Philippe Doyon, Celine Scornavacca, K. Yu. Go...
BMCBI
2010
108views more  BMCBI 2010»
8 years 11 months ago
iGTP: A software package for large-scale gene tree parsimony analysis
Background: The ever-increasing wealth of genomic sequence information provides an unprecedented opportunity for large-scale phylogenetic analysis. However, species phylogeny infe...
Ruchi Chaudhary, Mukul S. Bansal, André Weh...
RECOMB
2009
Springer
10 years 21 days ago
New Perspectives on Gene Family Evolution: Losses in Reconciliation and a Link with Supertrees
Reconciliation between a set of gene trees and a species tree is the most commonly used approach to infer the duplication and loss events in the evolution of gene families, given a...
Cedric Chauve, Nadia El-Mabrouk
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