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DATE
2008
IEEE
163views Hardware» more  DATE 2008»
13 years 11 months ago
Design flow for embedded FPGAs based on a flexible architecture template
Modern digital signal processing applications have an increasing demand for computational power while needing to preserve low power dissipation and high flexibility. For many appl...
B. Neumann, Thorsten von Sydow, Holger Blume, Tobi...
IPPS
2006
IEEE
13 years 11 months ago
Parallel implementation of the replica exchange molecular dynamics algorithm on Blue Gene/L
The Replica Exchange method is a popular approach for studying the folding thermodynamics of small to modest size proteins in explicit solvent, since it is easily parallelized. Ho...
Maria Eleftheriou, Aleksandr Rayshubskiy, Jed W. P...
GRID
2007
Springer
13 years 11 months ago
Grid-based asynchronous replica exchange
— Replica exchange is a powerful sampling algorithm and can be effectively used for applications such as simulating the structure, function, folding, and dynamics of proteins and...
Zhen Li, Manish Parashar
CEC
2005
IEEE
13 years 10 months ago
A genetic algorithm for energy minimization in bio-molecular systems
Energy minimization algorithms for bio-molecular systems are critical to applications such as the prediction of protein folding. Conventional energy minimization methods such as th...
Xiaochun Weng, Lutz Hamel, Lenore M. Martin, Joan ...
BCS
2008
13 years 6 months ago
A Customisable Multiprocessor for Application-Optimised Inductive Logic Programming
This paper describes a customisable processor designed to accelerate execution of inductive logic programming, targeting advanced field-programmable gate array (FPGA) technology. ...
Andreas Fidjeland, Wayne Luk, Stephen Muggleton