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ICASSP
2008
IEEE
13 years 12 months ago
Probabilistic structural alignment of RNA sequences
We propose an algorithm for estimating the common secondary structure, alignment, and posterior base pairing probabilities for two RNA sequences. A definition of structural align...
Arif Ozgun Harmanci, Gaurav Sharma, David H. Mathe...
DEXA
2007
Springer
150views Database» more  DEXA 2007»
13 years 11 months ago
Sequence Alignment as a Database Technology Challenge
Abstract. Sequence alignment is an important task for molecular biologists. Because alignment basically deals with approximate string matching on large biological sequence collecti...
Hans Philippi
WABI
2009
Springer
128views Bioinformatics» more  WABI 2009»
14 years 1 days ago
A General Framework for Local Pairwise Alignment Statistics with Gaps
We present a novel dynamic programming framework that allows one to compute tight upper bounds for the p-values of gapped local alignments in pseudo–polynomial time. Our algorith...
Pasi Rastas
BMCBI
2006
150views more  BMCBI 2006»
13 years 5 months ago
CGAT: a comparative genome analysis tool for visualizing alignments in the analysis of complex evolutionary changes between clos
Background: The recent accumulation of closely related genomic sequences provides a valuable resource for the elucidation of the evolutionary histories of various organisms. Howev...
Ikuo Uchiyama, Toshio Higuchi, Ichizo Kobayashi
ICASSP
2008
IEEE
13 years 12 months ago
Audio cover song identification based on tonal sequence alignment
Nowadays, the term cover song (or simply cover) can mean any new version, performance, rendition, or recording of a previously recorded track. Cover song identification is a task...
Joan Serrà, Emilia Gómez