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BMCBI
2005
82views more  BMCBI 2005»
13 years 5 months ago
Quality assessment of microarrays: Visualization of spatial artifacts and quantitation of regional biases
Background: Quality-control is an important issue in the analysis of gene expression microarrays. One type of problem is regional bias, in which one region of a chip shows artifac...
Mark Reimers, John N. Weinstein
BMCBI
2007
97views more  BMCBI 2007»
13 years 5 months ago
SIRAC: Supervised Identification of Regions of Aberration in aCGH datasets
Background: Array comparative genome hybridization (aCGH) provides information about genomic aberrations. Alterations in the DNA copy number may cause the cell to malfunction, lea...
Carmen Lai, Hugo M. Horlings, Marc J. van de Vijve...
PLDI
1998
ACM
13 years 10 months ago
Simplification of Array Access Patterns for Compiler Optimizations
Existing array region representation techniques are sensitive to the complexity of array subscripts. In general, these techniques are very accurate and efficient for simple subscr...
Yunheung Paek, Jay Hoeflinger, David A. Padua
FPL
2009
Springer
132views Hardware» more  FPL 2009»
13 years 9 months ago
Binary Synthesis with multiple memory banks targeting array references
High-Level Synthesis (HLS) is the field of transforming a high-level programming language, such as C, into a register transfer level(RTL) description of the design. In HLS, Binary...
Yosi Ben-Asher, Nadav Rotem
BMCBI
2011
12 years 9 months ago
Wavelet-based identification of DNA focal genomic aberrations from single nucleotide polymorphism arrays
Background: Copy number aberrations (CNAs) are an important molecular signature in cancer initiation, development, and progression. However, these aberrations span a wide range of...
Youngmi Hur, Hyunju Lee