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ISMB
1993
13 years 6 months ago
Representations of Metabolic Knowledge
Construction of electronic repositories of metabolic information is an increasingly active area of research. Encoding detailed knowledge of a complex biological domain requires ...
Peter D. Karp, Monica Riley
ISMB
1994
13 years 6 months ago
Representations of Metabolic Knowledge: Pathways
The automatic generation of drawings of metabolic pathways is a challenging problem that depends intimately on exactly what information has been recorded for each pathway, and on ...
Peter D. Karp, Suzanne M. Paley
NC
2010
146views Neural Networks» more  NC 2010»
13 years 3 months ago
Petri nets for modelling metabolic pathways: a survey
Abstract. In the last fifteen years, several research efforts have been directed towards the representation and the analysis of metabolic pathways by using Petri nets. The goal o...
Paolo Baldan, Nicoletta Cocco, Andrea Marin, Marta...
NAR
2011
224views Computer Vision» more  NAR 2011»
12 years 7 months ago
KaPPA-View4: a metabolic pathway database for representation and analysis of correlation networks of gene co-expression and meta
Correlations of gene-to-gene co-expression and metabolite-to-metabolite co-accumulation calculated from large amounts of transcriptome and metabolome data are useful for uncoverin...
Nozomu Sakurai, Takeshi Ara, Yoshiyuki Ogata, Ryos...
BMCBI
2008
117views more  BMCBI 2008»
13 years 4 months ago
Using a logical model to predict the growth of yeast
Background: A logical model of the known metabolic processes in S. cerevisiae was constructed from iFF708, an existing Flux Balance Analysis (FBA) model, and augmented with inform...
Ken E. Whelan, Ross D. King