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BMCBI
2008
108views more  BMCBI 2008»
13 years 4 months ago
SPRINT: A new parallel framework for R
Background: Microarray analysis allows the simultaneous measurement of thousands to millions of genes or sequences across tens to thousands of different samples. The analysis of t...
Jon Hill, Matthew Hambley, Thorsten Forster, Murie...
BMCBI
2010
141views more  BMCBI 2010»
13 years 4 months ago
BioPhysConnectoR: Connecting Sequence Information and Biophysical Models
Background: One of the most challenging aspects of biomolecular systems is the understanding of the coevolution in and among the molecule(s). A complete, theoretical picture of th...
Franziska Hoffgaard, Philipp Weil, Kay Hamacher
IPPS
1999
IEEE
13 years 9 months ago
A New Approach to Parallel Dynamic Partitioning for Adaptive Unstructured Meshes
Classical mesh partitioning algorithms were designed for rather static situations, and their straightforward application in a dynamical framework may lead to unsatisfactory result...
Gerd Heber, Guang R. Gao, Rupak Biswas
IPPS
2006
IEEE
13 years 10 months ago
A framework to develop symbolic performance models of parallel applications
Performance and workload modeling has numerous uses at every stage of the high-end computing lifecycle: design, integration, procurement, installation and tuning. Despite the trem...
Sadaf R. Alam, Jeffrey S. Vetter
IJHPCA
2010
88views more  IJHPCA 2010»
13 years 3 months ago
Madre: the Memory-Aware Data Redistribution Engine
We report on the development of a new computational framework for efficiently carrying out parallel data redistribution in a limited memory environment. This new library, MADRE (T...
Stephen F. Siegel, Andrew R. Siegel