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» Sequence Comparison Using a Relational Database Approach
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BMCBI
2006
95views more  BMCBI 2006»
13 years 5 months ago
Discrete profile comparison using information bottleneck
Sequence homologs are an important source of information about proteins. Amino acid profiles, representing the position-specific mutation probabilities found in profiles, are a ri...
Sean O'Rourke, Gal Chechik, Robin Friedman, Eleaza...
BMCBI
2008
149views more  BMCBI 2008»
13 years 5 months ago
Clustering of cognate proteins among distinct proteomes derived from multiple links to a single seed sequence
Background: Modern proteomes evolved by modification of pre-existing ones. It is extremely important to comparative biology that related proteins be identified as members of the s...
Adriano Barbosa-Silva, Venkata P. Satagopam, Reinh...
NAR
2007
81views more  NAR 2007»
13 years 5 months ago
Pseudogene.org: a comprehensive database and comparison platform for pseudogene annotation
The Pseudogene.org database serves as a comprehensive repository for pseudogene sequence annotation. The definition of a pseudogene varies within the literature, resulting in sign...
John E. Karro, Yangpan Yan, Deyou Zheng, Zhaolei Z...
BMCBI
2010
152views more  BMCBI 2010»
13 years 5 months ago
A high-throughput de novo sequencing approach for shotgun proteomics using high-resolution tandem mass spectrometry
Background: High-resolution tandem mass spectra can now be readily acquired with hybrid instruments, such as LTQ-Orbitrap and LTQ-FT, in high-throughput shotgun proteomics workflo...
Chongle Pan, Byung-Hoon Park, William H. McDonald,...
WWW
2003
ACM
13 years 11 months ago
Using Index to Manage the Ordering Structure of XML Data in the Nested Relational Sequence Database System
In this poster, we introduce the mechanism of handling the ordering structure of XML data by using the Nested Relational Sequence Database System (NRSD), which is built upon the N...
Ho Lam Lau, Wilfred Ng