612 search results - page 1 / 123 » Sequence Database Search Using Jumping Alignments |
GCB
2001
Springer
13 years 9 months ago
2001
Springer
BMCBI
2006
2006
A jumping profile Hidden Markov Model and applications to recombination sites in HIV and HCV genomes
13 years 4 months ago
Background: Jumping alignments have recently been proposed as a strategy to search a given multiple sequence alignment A against a database. Instead of comparing a database sequen...
JCB
2002
13 years 4 months ago
2002
We describe a new algorithm for protein classi cation and the detection of remote homologs. The rationale is to exploit both vertical and horizontal information of a multiple alig...
APBC
2004
13 years 6 months ago
2004
In this study we have designed a novel algorithm for searching common segments in multiple DNA sequences. To improve efficiency in pattern searching, combination of hashing encodi...
IPPS
2003
IEEE
13 years 10 months ago
2003
IEEE
Progressive sequence model refinement by means of iterative searches is an effective technique for high sensitivity database searches and is currently employed in popular tools s...