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» Shape Distributions and Protein Similarity
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GCB
2006
Springer
99views Biometrics» more  GCB 2006»
13 years 8 months ago
Shape Distributions and Protein Similarity
: In this paper we describe a similarity model that provides the objective basis for clustering proteins of similar structure. More specifically, we consider the following variant ...
Stefan Canzar, Jan Remy
DASFAA
2005
IEEE
209views Database» more  DASFAA 2005»
13 years 10 months ago
PADS: Protein Structure Alignment Using Directional Shape Signatures
A novel approach for similarity search on the protein structure databases is proposed. PADS (Protein Alignment by Directional shape Signatures) incorporates the three dimensional ...
S. Alireza Aghili, Divyakant Agrawal, Amr El Abbad...
BMCBI
2005
115views more  BMCBI 2005»
13 years 4 months ago
Statistical distributions of optimal global alignment scores of random protein sequences
Background: The inference of homology from statistically significant sequence similarity is a central issue in sequence alignments. So far the statistical distribution function un...
Hongxia Pang, Jiaowei Tang, Su-Shing Chen, Shiheng...
ISBI
2004
IEEE
14 years 5 months ago
Automated Interpretation of Subcellular Location Patterns
Fluorescence microscopy is widely used to analyze the distribution of proteins within cells. As currently practiced, the assignment of a protein to a particular organelle is done ...
Robert F. Murphy
BMCBI
2006
150views more  BMCBI 2006»
13 years 4 months ago
Protein structure similarity from principle component correlation analysis
Background: Owing to rapid expansion of protein structure databases in recent years, methods of structure comparison are becoming increasingly effective and important in revealing...
Xiaobo Zhou, James Chou, Stephen T. C. Wong