Sciweavers

25 search results - page 2 / 5
» Similarity of position frequency matrices for transcription ...
Sort
View
BMCBI
2006
124views more  BMCBI 2006»
13 years 5 months ago
Predicting transcription factor binding sites using local over-representation and comparative genomics
Background: Identifying cis-regulatory elements is crucial to understanding gene expression, which highlights the importance of the computational detection of overrepresented tran...
Matthieu Defrance, Hélène Touzet
ICASSP
2008
IEEE
13 years 11 months ago
Modeling regulatory sites with higher order position-dependent weight matrices
Identification of regulatory signals in DNA depends on the nature and quality of the patterns of representative sequences. These patterns are constructed from training sets of se...
Hossein Zare, Mostafa Kaveh, Arkady B. Khodursky
BMCBI
2010
153views more  BMCBI 2010»
13 years 5 months ago
Metamotifs - a generative model for building families of nucleotide position weight matrices
Background: Development of high-throughput methods for measuring DNA interactions of transcription factors together with computational advances in short motif inference algorithms...
Matias Piipari, Thomas A. Down, Tim J. P. Hubbard
NAR
2006
156views more  NAR 2006»
13 years 5 months ago
VOMBAT: prediction of transcription factor binding sites using variable order Bayesian trees
Variable order Markov models and variable order Bayesian trees have been proposed for the recognition of transcription factor binding sites, and it could be demonstrated that they...
Jan Grau, Irad E. Ben-Gal, Stefan Posch, Ivo Gross...
CSB
2005
IEEE
125views Bioinformatics» more  CSB 2005»
13 years 11 months ago
Discriminative Discovery of Transcription Factor Binding Sites from Location Data
Motivation: The availability of genome-wide location analyses based on chromatin immunoprecipitation (ChIP) data gives a new insight for in silico analysis of transcriptional regu...
Yuji Kawada, Yasubumi Sakakibara