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DNA
2005
Springer
117views Bioinformatics» more  DNA 2005»
13 years 10 months ago
Simple Operations for Gene Assembly
Abstract. The intramolecular model for gene assembly in ciliates considers three operations, ld, hi, and dlad that can assemble any gene pattern through folding and recombination: ...
Tero Harju, Ion Petre, Vladimir Rogojin, Grzegorz ...
TCS
2008
13 years 5 months ago
Sequential vs. parallel complexity in simple gene assembly
We investigate some differences between the general intramolecular model for gene assembly and its restricted simple model. Although both models satisfactorily sort all current ex...
Miika Langille, Ion Petre
DAM
2008
75views more  DAM 2008»
13 years 5 months ago
Patterns of simple gene assembly in ciliates
The intramolecular model for gene assembly in ciliates considers three operations, ld, hi, and dlad that can assemble any gene pattern through folding and recombination: the molec...
Tero Harju, Ion Petre, Vladimir Rogojin, Grzegorz ...
FCT
2007
Springer
13 years 11 months ago
A String-Based Model for Simple Gene Assembly
Abstract. The simple intramolecular model for gene assembly in ciliates is particularly interesting because it can predict the correct assembly of all available experimental data, ...
Robert Brijder, Miika Langille, Ion Petre
IANDC
2008
213views more  IANDC 2008»
13 years 5 months ago
Decision problem for shuffled genes
We consider a permutation-based model for the gene assembly process in ciliates. We give a procedure to decide whether a given micronuclear molecules may be assembled by using onl...
Ion Petre, Vladimir Rogojin