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ANSS
2006
IEEE
13 years 11 months ago
Simulation and Analysis of Complex Biological Processes: an Organisation Modelling Perspective
This paper explores how the dynamics of complex biological processes can be modelled and simulated as an organisation of multiple agents. This modelling perspective identifies org...
Tibor Bosse, Catholijn M. Jonker, Jan Treur
APIN
2007
94views more  APIN 2007»
13 years 5 months ago
Agent-oriented modeling of the dynamics of biological organisms
In this paper the agent-oriented modeling perspective to cope with biological complexity is discussed. Three levels of dynamics can distinguished and related to each other: dynami...
Catholijn M. Jonker, Jan Treur
SAC
2004
ACM
13 years 10 months ago
Combining analysis and synthesis in a model of a biological cell
for ideas, and then abstract away from these ideas to produce algorithmic processes that can create problem solutions in a bottom-up manner. We have previously described a top-dow...
Ken Webb, Tony White
CSB
2005
IEEE
130views Bioinformatics» more  CSB 2005»
13 years 10 months ago
iSimBioSys: An "In Silico" Discrete Event Simulation Framework for Modeling Biological Systems
The genome projects have provided comprehensive information about the basic building blocks of life. The next challenge is to understand how biological functions emerge from compl...
Samik Ghosh, Preetam Ghosh, Kalyan Basu, Sajal K. ...
BMCBI
2007
215views more  BMCBI 2007»
13 years 5 months ago
Learning causal networks from systems biology time course data: an effective model selection procedure for the vector autoregres
Background: Causal networks based on the vector autoregressive (VAR) process are a promising statistical tool for modeling regulatory interactions in a cell. However, learning the...
Rainer Opgen-Rhein, Korbinian Strimmer