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» Solving the Protein Threading Problem in Parallel
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IPPS
2005
IEEE
13 years 10 months ago
Possibilities to Solve the Clique Problem by Thread Parallelism using Task Pools
We construct parallel algorithms with implementations to solve the clique problem in practice and research their computing time compared with sequential algorithms. The parallel a...
Holger Blaar, Thomas Lange, Renate Winter, Marcel ...
WABI
2005
Springer
109views Bioinformatics» more  WABI 2005»
13 years 10 months ago
Optimal Protein Threading by Cost-Splitting
Abstract. In this paper, we use integer programming approach for solving a hard combinatorial optimization problem, namely protein threading. For this sequence-to-structure alignme...
Philippe Veber, Nicola Yanev, Rumen Andonov, Vince...
PPDP
2005
Springer
13 years 10 months ago
Heuristics, optimizations, and parallelism for protein structure prediction in CLP(FD)
The paper describes a constraint-based solution to the protein folding problem on face-centered cubic lattices—a biologically meaningful approximation of the general protein fol...
Alessandro Dal Palù, Agostino Dovier, Enric...
FGCS
2007
106views more  FGCS 2007»
13 years 4 months ago
A parallel hybrid genetic algorithm for protein structure prediction on the computational grid
Solving the structure prediction problem for complex proteins is difficult and computationally expensive. In this paper, we propose a bicriterion parallel hybrid genetic algorith...
Alexandru-Adrian Tantar, Nouredine Melab, El-Ghaza...