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» Solving the Protein Threading Problem in Parallel
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SAG
2004
Springer
13 years 11 months ago
Modelling a Protein Structure Comparison Application on the Grid Using PROTEUS
Bioinformatics applications manage complex biological data stored into distributed and often heterogeneous databases and require large computing power. Among these, protein structu...
Mario Cannataro, Matteo Comin, Carlo Ferrari, Conc...
CCGRID
2003
IEEE
13 years 11 months ago
A Parallel FPT Application For Clusters
Fixed-parameter tractability (FPT) techniques have recently been successful in solving NP-complete problem instances of practical importance which were too large to be solved with...
James Cheetham, Frank K. H. A. Dehne, Andrew Rau-C...
ICPP
2007
IEEE
14 years 2 days ago
Efficient Parallel Algorithm for Optimal Three-Sequences Alignment
Sequence alignment is a fundamental problem in the computational biology. Many alignment methods have been proposed in the literature, such as pair-wise sequence alignment (2SA), ...
Chun-Yuan Lin, Chen Tai Huang, Yeh-Ching Chung, Ch...
WOB
2003
140views Bioinformatics» more  WOB 2003»
13 years 7 months ago
Computing Maximum Subsequence in Parallel
The maximum subsequence problem finds the contiguous subsequence of n real numbers with the highest sum. This is an important problem that arises in several contexts in Computatio...
Carlos E. R. Alves, Edson Cáceres, Siang W....
HPCA
1995
IEEE
13 years 9 months ago
The Effects of STEF in Finely Parallel Multithreaded Processors
The throughput of a multiple-pipelined processor suffers due to lack of sufficient instructions to make multiple pipelines busy and due to delays associated with pipeline depende...
Yamin Li, Wanming Chu