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» Sparse RNA Folding: Time and Space Efficient Algorithms
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BMCBI
2008
99views more  BMCBI 2008»
13 years 5 months ago
Multiple organism algorithm for finding ultraconserved elements
Background: Ultraconserved elements are nucleotide or protein sequences with 100% identity (no mismatches, insertions, or deletions) in the same organism or between two or more or...
Scott Christley, Neil F. Lobo, Gregory R. Madey
RECOMB
2008
Springer
14 years 6 months ago
Algorithms for Joint Optimization of Stability and Diversity in Planning Combinatorial Libraries of Chimeric Proteins
Abstract. In engineering protein variants by constructing and screening combinatorial libraries of chimeric proteins, two complementary and competing goals are desired: the new pro...
Wei Zheng, Alan M. Friedman, Chris Bailey-Kellogg
CVPR
2010
IEEE
13 years 9 months ago
Ray Markov Random Fields for Image-Based 3D Modeling: Model and Efficient Inference
In this paper, we present an approach to multi-view image-based 3D reconstruction by statistically inversing the ray-tracing based image generation process. The proposed algorithm...
Shubao Liu, David Cooper
KDD
2008
ACM
165views Data Mining» more  KDD 2008»
14 years 6 months ago
Colibri: fast mining of large static and dynamic graphs
Low-rank approximations of the adjacency matrix of a graph are essential in finding patterns (such as communities) and detecting anomalies. Additionally, it is desirable to track ...
Hanghang Tong, Spiros Papadimitriou, Jimeng Sun, P...
AIPS
2010
13 years 6 months ago
Incrementally Solving STNs by Enforcing Partial Path Consistency
Efficient management and propagation of temporal constraints is important for temporal planning as well as for scheduling. During plan development, new events and temporal constra...
Léon Planken, Mathijs de Weerdt, Neil Yorke...