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CIKM
2005
Springer
13 years 10 months ago
A hybrid approach to NER by MEMM and manual rules
This paper describes a framework for defining domain specific Feature Functions in a user friendly form to be used in a Maximum Entropy Markov Model (MEMM) for the Named Entity Re...
Moshe Fresko, Binyamin Rosenfeld, Ronen Feldman
BMCBI
2010
227views more  BMCBI 2010»
13 years 5 months ago
Accurate and efficient gp120 V3 loop structure based models for the determination of HIV-1 co-receptor usage
Background: HIV-1 targets human cells expressing both the CD4 receptor, which binds the viral envelope glycoprotein gp120, as well as either the CCR5 (R5) or CXCR4 (X4) co-recepto...
Majid Masso, Iosif I. Vaisman
BMCBI
2008
115views more  BMCBI 2008»
13 years 5 months ago
Probe signal correction for differential methylation hybridization experiments
Background: Non-biological signal (or noise) has been the bane of microarray analysis. Hybridization effects related to probe-sequence composition and DNA dye-probe interactions h...
Dustin P. Potter, Pearlly Yan, Tim Hui-Ming Huang,...
BMCBI
2007
106views more  BMCBI 2007»
13 years 4 months ago
Discovering functional linkages and uncharacterized cellular pathways using phylogenetic profile comparisons: a comprehensive as
Background: A widely-used approach for discovering functional and physical interactions among proteins involves phylogenetic profile comparisons (PPCs). Here, proteins with simila...
Raja Jothi, Teresa M. Przytycka, L. Aravind