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» Stochastic Motif Extraction Using Hidden Markov Model
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NIPS
2008
13 years 7 months ago
The Infinite Factorial Hidden Markov Model
We introduce a new probability distribution over a potentially infinite number of binary Markov chains which we call the Markov Indian buffet process. This process extends the IBP...
Jurgen Van Gael, Yee Whye Teh, Zoubin Ghahramani
AAAI
2000
13 years 7 months ago
Information Extraction with HMM Structures Learned by Stochastic Optimization
Recent research has demonstrated the strong performance of hidden Markov models applied to information extraction--the task of populating database slots with corresponding phrases...
Dayne Freitag, Andrew McCallum
BMCBI
2002
133views more  BMCBI 2002»
13 years 5 months ago
Identification and characterization of subfamily-specific signatures in a large protein superfamily by a hidden Markov model app
Background: Most profile and motif databases strive to classify protein sequences into a broad spectrum of protein families. The next step of such database studies should include ...
Kevin Truong, Mitsuhiko Ikura
JCB
2008
159views more  JCB 2008»
13 years 6 months ago
BayesMD: Flexible Biological Modeling for Motif Discovery
We present BayesMD, a Bayesian Motif Discovery model with several new features. Three different types of biological a priori knowledge are built into the framework in a modular fa...
Man-Hung Eric Tang, Anders Krogh, Ole Winther
IJCAI
2003
13 years 7 months ago
Hierarchical Hidden Markov Models for Information Extraction
Information extraction can be defined as the task of automatically extracting instances of specified classes or relations from text. We consider the case of using machine learni...
Marios Skounakis, Mark Craven, Soumya Ray