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WSC
2008
13 years 7 months ago
Modeling and simulation of e-mail social networks: A new stochastic agent-based approach
Understanding how the structure of a network evolves over time is one of the most interesting and complex topics in the field of social networks. In our attempt to model the dynam...
Fabian Menges, Bud Mishra, Giuseppe Narzisi
BIOCOMP
2010
13 years 3 months ago
A Model Reduction Technique for Stochastic Biochemical Kinetics
Abstract-- Modeling the intermolecular reactions in a single cell is a critical problem in computational biology. Biochemical reaction systems often involve species in both low and...
Silvana Ilie, Ekaterina Kudashkina
BMCBI
2007
157views more  BMCBI 2007»
13 years 5 months ago
A hybrid multiscale Monte Carlo algorithm (HyMSMC) to cope with disparity in time scales and species populations in intracellula
Background: The fundamental role that intrinsic stochasticity plays in cellular functions has been shown via numerous computational and experimental studies. In the face of such e...
Asawari Samant, Babatunde A. Ogunnaike, Dionisios ...
ICCS
2009
Springer
13 years 12 months ago
Simulating Individual-Based Models of Epidemics in Hierarchical Networks
Current mathematical modeling methods for the spreading of infectious diseases are too simplified and do not scale well. We present the Simulator of Epidemic Evolution in Complex ...
Rick Quax, David A. Bader, Peter M. A. Sloot
BMCBI
2004
323views more  BMCBI 2004»
13 years 5 months ago
Biochemical Network Stochastic Simulator (BioNetS): software for stochastic modeling of biochemical networks
Background: Intrinsic fluctuations due to the stochastic nature of biochemical reactions can have large effects on the response of biochemical networks. This is particularly true ...
David Adalsteinsson, David McMillen, Timothy C. El...