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BMCBI
2011
13 years 7 days ago
A lightweight, flow-based toolkit for parallel and distributed bioinformatics pipelines
Background: Bioinformatic analyses typically proceed as chains of data-processing tasks. A pipeline, or ‘workflow’, is a well-defined protocol, with a specific structure defin...
Marcin Cieslik, Cameron Mura
PODC
2004
ACM
13 years 10 months ago
Analyzing Kleinberg's (and other) small-world Models
We analyze the properties of Small-World networks, where links are much more likely to connect “neighbor nodes” than distant nodes. In particular, our analysis provides new re...
Charles U. Martel, Van Nguyen
INFOCOM
2008
IEEE
13 years 11 months ago
Area Avoidance Routing in Distance-Vector Networks
Network routing may be required, under certain applications, to avoid certain areas (or nodes) These areas can be of potential security threat, possess poor quality or have other ...
Haim Zlatokrilov, Hanoch Levy
IPPS
2003
IEEE
13 years 10 months ago
Autonomous Protocols for Bandwidth-Centric Scheduling of Independent-Task Applications
In this paper we investigate protocols for scheduling applications that consist of large numbers of identical, independent tasks on large-scale computing platforms. By imposing a ...
Barbara Kreaseck, Larry Carter, Henri Casanova, Je...
BMCBI
2007
102views more  BMCBI 2007»
13 years 5 months ago
Multivariate Analysis and Visualization of Splicing Correlations in Single-Gene Transcriptomes
Background: RNA metabolism, through 'combinatorial splicing', can generate enormous structural diversity in the proteome. Alternative domains may interact, however, with...
Mark C. Emerick, Giovanni Parmigiani, William S. A...