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CCE
2008
13 years 5 months ago
Structured modeling for processes: A thermodynamical network theory
We review the use of bond graphs for modeling of physico-chemical processes. We recall that bond graphs define a circuit-type language which root on a thermodynamical consistent d...
Françoise Couenne, Christian Jallut, Bernha...
CCE
2007
13 years 4 months ago
A systematic approach to plant-wide control based on thermodynamics
In this work, a systematic approach to plant-wide control design is proposed. The method combines ingredients from process networks, thermodynamics and systems theory to derive ro...
Luis T. Antelo, Irene Otero-Muras, Julio R. Banga,...
BMCBI
2007
169views more  BMCBI 2007»
13 years 5 months ago
Transcriptional regulatory network refinement and quantification through kinetic modeling, gene expression microarray data and i
Background: Gene expression microarray and other multiplex data hold promise for addressing the challenges of cellular complexity, refined diagnoses and the discovery of well-targ...
Abdallah Sayyed-Ahmad, Kagan Tuncay, Peter J. Orto...
BMCBI
2006
92views more  BMCBI 2006»
13 years 5 months ago
Systematic assignment of thermodynamic constraints in metabolic network models
Background: The availability of genome sequences for many organisms enabled the reconstruction of several genome-scale metabolic network models. Currently, significant efforts are...
Anne Kümmel, Sven Panke, Matthias Heinemann
BMCBI
2004
151views more  BMCBI 2004»
13 years 4 months ago
Design, implementation and evaluation of a practical pseudoknot folding algorithm based on thermodynamics
Background: The general problem of RNA secondary structure prediction under the widely used thermodynamic model is known to be NP-complete when the structures considered include a...
Jens Reeder, Robert Giegerich