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    BMCBI
    2008
    86views more  BMCBI 2008»
    Subfamily specific conservation profiles for proteins based on n-gram patterns
    13 years 5 months ago
    Subfamily specific conservation profiles for proteins based on n-gram patterns
    Download  www.biomedcentral.com
    Background: A new algorithm has been developed for generating conservation profiles that reflect the evolutionary history of the subfamily associated with a query sequence. It is ...
    John K. Vries, Xiong Liu
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    BMCBI
    2007
    130views more  BMCBI 2007»
    HMM-ModE - Improved classification using profile hidden Markov models by optimising the discrimination threshold and modifying e
    13 years 5 months ago
    HMM-ModE - Improved classification using profile hidden Markov models by optimising the discrimination threshold and modifying e
    Download  www.biomedcentral.com
    Background: Profile Hidden Markov Models (HMM) are statistical representations of protein families derived from patterns of sequence conservation in multiple alignments and have b...
    Prashant K. Srivastava, Dhwani K. Desai, Soumyadee...
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    ISBRA
    2009
    Springer
    206views Bioinformatics» more  ISBRA 2009»
    Mining of cis-Regulatory Motifs Associated with Tissue-Specific Alternative Splicing
    13 years 11 months ago
    Mining of cis-Regulatory Motifs Associated with Tissue-Specific Alternative Splicing
    Download  www.lib.ncsu.edu
    KIM, JIHYE. Mining of Cis-Regulatory Motifs Associated with Tissue-Specific Alternative Splicing. (Under the direction of Steffen Heber). Alternative splicing (AS) is an important...
    Jihye Kim, Sihui Zhao, Brian E. Howard, Steffen He...
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    BMCBI
    2006
    190views more  BMCBI 2006»
    SNPs3D: Candidate gene and SNP selection for association studies
    13 years 5 months ago
    SNPs3D: Candidate gene and SNP selection for association studies
    Download  moult.ibbr.umd.edu
    Background: The relationship between disease susceptibility and genetic variation is complex, and many different types of data are relevant. We describe a web resource and databas...
    Peng Yue, Eugene Melamud, John Moult
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    BMCBI
    2002
    108views more  BMCBI 2002»
    A memory-efficient dynamic programming algorithm for optimal alignment of a sequence to an RNA secondary structure
    13 years 4 months ago
    A memory-efficient dynamic programming algorithm for optimal alignment of a sequence to an RNA secondary structure
    Download  www.biomedcentral.com
    Background: Covariance models (CMs) are probabilistic models of RNA secondary structure, analogous to profile hidden Markov models of linear sequence. The dynamic programming algo...
    Sean R. Eddy
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