11 search results - page 1 / 3 » Suboptimal Local Alignments Across Multiple Scoring Schemes |
WABI
2004
Springer
13 years 10 months ago
2004
Springer
Abstract. Sequence alignment algorithms have a long standing tradition in bioinformatics. In this paper, we formulate an extension to existing local alignment algorithms: local ali...
TCBB
2008
13 years 4 months ago
2008
When aligning biological sequences, the choice of scoring scheme is critical. Even small changes in gap penalties, for example, can yield radically different alignments. A rigorous...
BMCBI
2006
13 years 5 months ago
2006
Background: A structure alignment method based on a local geometric property is presented and its performance is tested in pairwise and multiple structure alignments. In this appr...
ALMOB
2006
13 years 5 months ago
2006
The main goal of the motif finding problem is to detect novel, over-represented unknown signals in a set of sequences (e.g. transcription factor binding sites in a genome). The mo...
BMCBI
2010
13 years 5 months ago
2010
Background: Genome sequence alignments form the basis of much research. Genome alignment depends on various mundane but critical choices, such as how to mask repeats and which sco...