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» Substructure Similarity Search in Graph Databases
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BMCBI
2010
122views more  BMCBI 2010»
13 years 5 months ago
Fast and accurate protein substructure searching with simulated annealing and GPUs
Background: Searching a database of protein structures for matches to a query structure, or occurrences of a structural motif, is an important task in structural biology and bioin...
Alex Stivala, Peter J. Stuckey, Anthony Wirth
EDBT
2009
ACM
277views Database» more  EDBT 2009»
13 years 9 months ago
G-hash: towards fast kernel-based similarity search in large graph databases
Structured data including sets, sequences, trees and graphs, pose significant challenges to fundamental aspects of data management such as efficient storage, indexing, and simila...
Xiaohong Wang, Aaron M. Smalter, Jun Huan, Gerald ...
ICDE
2006
IEEE
155views Database» more  ICDE 2006»
14 years 6 months ago
Mining, Indexing, and Similarity Search in Graphs and Complex Structures
Jiawei Han, Xifeng Yan, Philip S. Yu
BIBE
2007
IEEE
152views Bioinformatics» more  BIBE 2007»
13 years 5 months ago
SBLAST: Structural Basic Local Alignment Searching Tools using Geometric Hashing
While much research has been done on finding similarities between protein sequences, there has not been the same progress on finding similarities between protein structures. Here ...
Tom Milledge, Gaolin Zheng, Tim Mullins, Giri Nara...
ESWS
2008
Springer
13 years 6 months ago
Graph Summaries for Subgraph Frequency Estimation
A fundamental problem related to graph structured databases is searching for substructures. One issue with respect to optimizing such searches is the ability to estimate the freque...
Angela Maduko, Kemafor Anyanwu, Amit P. Sheth, Pau...