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PVLDB
2010
129views more  PVLDB 2010»
13 years 4 months ago
iGraph: A Framework for Comparisons of Disk-Based Graph Indexing Techniques
Graphs are of growing importance in modeling complex structures such as chemical compounds, proteins, images, and program dependence. Given a query graph Q, the subgraph isomorphi...
Wook-Shin Han, Jinsoo Lee, Minh-Duc Pham, Jeffrey ...
BMCBI
2008
211views more  BMCBI 2008»
13 years 6 months ago
CPSP-tools - Exact and complete algorithms for high-throughput 3D lattice protein studies
Background: The principles of protein folding and evolution pose problems of very high inherent complexity. Often these problems are tackled using simplified protein models, e.g. ...
Martin Mann, Sebastian Will, Rolf Backofen
RECOMB
2007
Springer
14 years 6 months ago
Minimizing and Learning Energy Functions for Side-Chain Prediction
Abstract. Side-chain prediction is an important subproblem of the general protein folding problem. Despite much progress in side-chain prediction, performance is far from satisfact...
Chen Yanover, Ora Schueler-Furman, Yair Weiss
ALT
2004
Springer
14 years 3 months ago
On Kernels, Margins, and Low-Dimensional Mappings
Kernel functions are typically viewed as providing an implicit mapping of points into a high-dimensional space, with the ability to gain much of the power of that space without inc...
Maria-Florina Balcan, Avrim Blum, Santosh Vempala
COMPGEOM
2005
ACM
13 years 8 months ago
Cache-oblivious r-trees
We develop a cache-oblivious data structure for storing a set S of N axis-aligned rectangles in the plane, such that all rectangles in S intersecting a query rectangle or point ca...
Lars Arge, Mark de Berg, Herman J. Haverkort