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BIBM
2010
IEEE
158views Bioinformatics» more  BIBM 2010»
13 years 3 months ago
Protein-protein interaction prediction via Collective Matrix Factorization
Abstract--Protein-protein interactions (PPI) play an important role in cellular processes and metabolic processes within a cell. An important task is to determine the existence of ...
Qian Xu, Evan Wei Xiang, Qiang Yang
ICS
2005
Tsinghua U.
13 years 10 months ago
Parallel sparse LU factorization on second-class message passing platforms
Several message passing-based parallel solvers have been developed for general (non-symmetric) sparse LU factorization with partial pivoting. Due to the fine-grain synchronizatio...
Kai Shen
SIAMSC
2010
142views more  SIAMSC 2010»
12 years 11 months ago
Hypergraph-Based Unsymmetric Nested Dissection Ordering for Sparse LU Factorization
In this paper we present HUND, a hypergraph-based unsymmetric nested dissection ordering algorithm for reducing the fill-in incurred during Gaussian elimination. HUND has several i...
Laura Grigori, Erik G. Boman, Simplice Donfack, Ti...
TOMS
2011
84views more  TOMS 2011»
12 years 12 months ago
A Supernodal Approach to Incomplete LU Factorization with Partial Pivoting
We present a new supernode-based incomplete LU factorization method to construct a preconditioner for solving sparse linear systems with iterative methods. The new algorithm is pr...
Xiaoye S. Li, Meiyue Shao