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BMCBI
2006
141views more  BMCBI 2006»
13 years 6 months ago
Visual setup of logical models of signaling and regulatory networks with ProMoT
Background: The analysis of biochemical networks using a logical (Boolean) description is an important approach in Systems Biology. Recently, new methods have been proposed to ana...
Julio Saez-Rodriguez, Sebastian Mirschel, Rebecca ...
TIME
2006
IEEE
13 years 12 months ago
Ultimately Periodic Simple Temporal Problems (UPSTPs)
In this paper, we consider quantitative temporal or spatial constraint networks whose constraints evolve over time in an ultimately periodic fashion. These constraint networks are...
Jean-François Condotta, Gérard Ligoz...
AIMSA
2008
Springer
14 years 10 days ago
Nested Precedence Networks with Alternatives: Recognition, Tractability, and Models
Integrated modeling of temporal and logical constraints is important for solving real-life planning and scheduling problems. Logical constrains extend the temporal formalism by rea...
Roman Barták, Ondrej Cepek
BIOCOMP
2007
13 years 7 months ago
Stability Analysis of Genetic Regulatory Network with Additive Noises
Background: Genetic regulatory networks (GRN) can be described by differential equations with SUM logic which has been found in many natural systems. Identification of the network...
Yufang Jin
JMLR
2010
159views more  JMLR 2010»
13 years 23 days ago
Inference of Sparse Networks with Unobserved Variables. Application to Gene Regulatory Networks
Networks are becoming a unifying framework for modeling complex systems and network inference problems are frequently encountered in many fields. Here, I develop and apply a gener...
Nikolai Slavov