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» The AnnoLite and AnnoLyze programs for comparative annotatio...
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NAR
2007
136views more  NAR 2007»
13 years 4 months ago
DBAli tools: mining the protein structure space
The DBAli tools use a comprehensive set of structural alignments in the DBAli database to leverage the structural information deposited in the Protein Data Bank (PDB). These tools...
Marc A. Martí-Renom, Ursula Pieper, Mallur ...
BMCBI
2007
144views more  BMCBI 2007»
13 years 5 months ago
Motif kernel generated by genetic programming improves remote homology and fold detection
Background: Protein remote homology detection is a central problem in computational biology. Most recent methods train support vector machines to discriminate between related and ...
Tony Håndstad, Arne J. H. Hestnes, Pål...
ML
2008
ACM
174views Machine Learning» more  ML 2008»
13 years 4 months ago
ALLPAD: approximate learning of logic programs with annotated disjunctions
In this paper we present the system ALLPAD for learning Logic Programs with Annotated Disjunctions (LPADs). ALLPAD modifies the previous system LLPAD in order to tackle real world ...
Fabrizio Riguzzi
BMCBI
2004
120views more  BMCBI 2004»
13 years 4 months ago
pdb-care (PDB CArbohydrate REsidue check): a program to support annotation of complex carbohydrate structures in PDB files
Background: Carbohydrates are involved in a variety of fundamental biological processes and pathological situations. They therefore have a large pharmaceutical and diagnostic pote...
Thomas Lütteke, Claus-Wilhelm von der Lieth