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» The Molecular Biology Toolkit (MBT): a modular platform for ...
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BMCBI
2005
102views more  BMCBI 2005»
13 years 4 months ago
The Molecular Biology Toolkit (MBT): a modular platform for developing molecular visualization applications
Background: The large amount of data that are currently produced in the biological sciences can no longer be explored and visualized efficiently with traditional, specialized soft...
John L. Moreland, Apostol Gramada, Oleksandr V. Bu...
ISMB
2007
13 years 7 months ago
A Chado case study: an ontology-based modular schema for representing genome-associated biological information
Motivation: A few years ago, FlyBase undertook to design a new database schema to store Drosophila data. It would fully integrate genomic sequence and annotation data with bibliog...
Chris Mungall, David B. Emmert
BMCBI
2006
123views more  BMCBI 2006»
13 years 4 months ago
SBEAMS-Microarray: database software supporting genomic expression analyses for systems biology
Background: The biological information in genomic expression data can be understood, and computationally extracted, in the context of systems of interacting molecules. The automat...
Bruz Marzolf, Eric W. Deutsch, Patrick Moss, David...
BMCBI
2010
167views more  BMCBI 2010»
13 years 4 months ago
BisoGenet: a new tool for gene network building, visualization and analysis
Background: The increasing availability and diversity of omics data in the post-genomic era offers new perspectives in most areas of biomedical research. Graph-based biological ne...
Alexander Martin, Maria Elena Ochagavia, Laya C. R...
BMCBI
2007
185views more  BMCBI 2007»
13 years 4 months ago
GEDI: a user-friendly toolbox for analysis of large-scale gene expression data
Background: Several mathematical and statistical methods have been proposed in the last few years to analyze microarray data. Most of those methods involve complicated formulas, a...
André Fujita, João Ricardo Sato, Car...