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» The Reactome pathway Knowledgebase
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BMCBI
2006
147views more  BMCBI 2006»
13 years 5 months ago
A case study in pathway knowledgebase verification
Background: Biological databases and pathway knowledgebases are proliferating rapidly. We are developing software tools for computer-aided hypothesis design and evaluation, and we...
Stephen A. Racunas, Nigam Shah, Nina V. Fedoroff
NAR
2011
201views Computer Vision» more  NAR 2011»
12 years 12 months ago
Reactome: a database of reactions, pathways and biological processes
David Croft, Gavin O'Kelly, Guanming Wu, Robin Haw...
BMCBI
2007
145views more  BMCBI 2007»
13 years 5 months ago
BioPP: a tool for web-publication of biological networks
Background: Cellular processes depend on the function of intracellular molecular networks. The curation of the literature relevant to specific biological pathways is important for...
Ganesh A. Viswanathan, German Nudelman, Sonali Pat...
BMCBI
2010
154views more  BMCBI 2010»
13 years 2 months ago
Knowledge-based matrix factorization temporally resolves the cellular responses to IL-6 stimulation
Background: External stimulations of cells by hormones, cytokines or growth factors activate signal transduction pathways that subsequently induce a re-arrangement of cellular gen...
Andreas Kowarsch, Florian Blöchl, Sebastian B...
BIBM
2007
IEEE
144views Bioinformatics» more  BIBM 2007»
13 years 11 months ago
Kinetic Modeling Using BioPAX Ontology
Thousands of biochemical interactions are available for download from curated databases such as Reactome, Pathway Interaction Database and other sources in the Biological Pathways...
Oliver Ruebenacker, Ion I. Moraru, James C. Schaff...