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NAR
2011
212views Computer Vision» more  NAR 2011»
12 years 7 months ago
The Sequence Read Archive
The combination of significantly lower cost and increased speed of sequencing has resulted in an explosive growth of data submitted into the primary next-generation sequence data ...
Rasko Leinonen, Hideaki Sugawara, Martin Shumway
BMCBI
2007
123views more  BMCBI 2007»
13 years 4 months ago
Tracembler - software for in-silico chromosome walking in unassembled genomes
Background: Whole genome shotgun sequencing produces increasingly higher coverage of a genome with random sequence reads. Progressive whole genome assembly and eventual finishing ...
Qunfeng Dong, Matthew D. Wilkerson, Volker Brendel
BMCBI
2010
129views more  BMCBI 2010»
13 years 4 months ago
Geoseq: a tool for dissecting deep-sequencing datasets
Background: Datasets generated on deep-sequencing platforms have been deposited in various public repositories such as the Gene Expression Omnibus (GEO), Sequence Read Archive (SR...
James Gurtowski, Anthony Cancio, Hardik Shah, Chay...
BCB
2010
150views Bioinformatics» more  BCB 2010»
12 years 11 months ago
REAL: an efficient REad ALigner for next generation sequencing reads
Kimon Frousios, Costas S. Iliopoulos, Laurent Mouc...
NAR
2011
233views Computer Vision» more  NAR 2011»
12 years 7 months ago
TIARA: a database for accurate analysis of multiple personal genomes based on cross-technology
High-throughput genomic technologies have been used to explore personal human genomes for the past few years. Although the integration of technologies is important for high-accura...
Dongwan Hong, Sung-Soo Park, Young Seok Ju, Sheehy...