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NAR
2011
208views Computer Vision» more  NAR 2011»
12 years 8 months ago
The UCSC Genome Browser database: update 2011
The University of California, Santa Cruz Genome Browser (http://genome.ucsc.edu) offers online access to a database of genomic sequence and annotation data for a wide variety of o...
Pauline A. Fujita, Brooke L. Rhead, Ann S. Zweig, ...
NAR
2011
208views Computer Vision» more  NAR 2011»
12 years 8 months ago
CaSNP: a database for interrogating copy number alterations of cancer genome from SNP array data
Cancer is known to have abundant copy number alterations (CNAs) that greatly contribute to its pathogenesis and progression. Investigation of CNA regions could potentially help id...
Qingyi Cao, Meng Zhou, Xujun Wang, Clifford A. Mey...
NAR
2007
115views more  NAR 2007»
13 years 5 months ago
PReMod: a database of genome-wide mammalian cis-regulatory module predictions
We describe PReMod, a new database of genomewide cis-regulatory module (CRM) predictions for both the human and the mouse genomes. The prediction algorithm, described previously i...
Vincent Ferretti, Christian Poitras, Dominique Ber...
BMCBI
2010
112views more  BMCBI 2010»
13 years 5 months ago
TabSQL: a MySQL tool to facilitate mapping user data to public databases
Background: With advances in high-throughput genomics and proteomics, it is challenging for biologists to deal with large data files and to map their data to annotations in public...
Xiaoqin Xia, Michael McClelland, Yipeng Wang
BMCBI
2010
178views more  BMCBI 2010»
13 years 5 months ago
CNV Workshop: an integrated platform for high-throughput copy number variation discovery and clinical diagnostics
Background: Recent studies have shown that copy number variations (CNVs) are frequent in higher eukaryotes and associated with a substantial portion of inherited and acquired risk...
Xiaowu Gai, Juan C. Perin, Kevin Murphy, Ryan O'Ha...