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WIA
2007
Springer
13 years 12 months ago
Analyzing Ambiguity of Context-Free Grammars
It has been known since 1962 that the ambiguity problem for context-free grammars is undecidable. Ambiguity in context-free grammars is a recurring problem in language design and p...
Claus Brabrand, Robert Giegerich, Anders Mø...
BIOCOMP
2006
13 years 7 months ago
Acceleration of Covariance Models for Non-coding RNA Search
Stochastic context-free grammar (SCFG) based models for non-coding RNA (ncRNA) gene searches are much more powerful than regular grammar based models due to the ability to model in...
Scott F. Smith 0002
BMCBI
2011
13 years 8 days ago
Multithreaded comparative RNA secondary structure prediction using stochastic context-free grammars
Background: The prediction of the structure of large RNAs remains a particular challenge in bioinformatics, due to the computational complexity and low levels of accuracy of state...
Zsuzsanna Sukosd, Bjarne Knudsen, Morten Vaerum, J...
PRICAI
2004
Springer
13 years 11 months ago
Computational Methods for Identification of Human microRNA Precursors
MicroRNA (miRNA), one of non-coding RNAs (ncRNAs), regulates gene expression directly by arresting the messenger RNA (mRNA) translation, which is important for identifying putative...
Jin-Wu Nam, Wha-Jin Lee, Byoung-Tak Zhang
JMLR
2010
134views more  JMLR 2010»
13 years 16 days ago
Using Contextual Representations to Efficiently Learn Context-Free Languages
We present a polynomial update time algorithm for the inductive inference of a large class of context-free languages using the paradigm of positive data and a membership oracle. W...
Alexander Clark, Rémi Eyraud, Amaury Habrar...