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BMCBI
2008
96views more  BMCBI 2008»
13 years 5 months ago
Use of normalization methods for analysis of microarrays containing a high degree of gene effects
Background: High-throughput microarrays are widely used to study gene expression across tissues and developmental stages. Analysis of gene expression data is challenging in these ...
Terri T. Ni, William J. Lemon, Yu Shyr, Tao P. Zho...
CSB
2005
IEEE
151views Bioinformatics» more  CSB 2005»
13 years 11 months ago
Lossless Compression of DNA Microarray Images
Microarray experiments are characterized by a massive amount of data, usually in the form of an image. Based on the nature of microarray images, we consider the microarray in term...
Yong Zhang, Rahul Parthe, Donald A. Adjeroh
NAR
2008
90views more  NAR 2008»
13 years 5 months ago
Many Microbe Microarrays Database: uniformly normalized Affymetrix compendia with structured experimental metadata
Many Microbe Microarrays Database (M3D ) is designed to facilitate the analysis and visualization of expression data in compendia compiled from multiple laboratories. M3D contains...
Jeremiah J. Faith, Michael E. Driscoll, Vincent A....
BMCBI
2007
123views more  BMCBI 2007»
13 years 5 months ago
Normalization and experimental design for ChIP-chip data
Background: Chromatin immunoprecipitation on tiling arrays (ChIP-chip) has been widely used to investigate the DNA binding sites for a variety of proteins on a genome-wide scale. ...
Shouyong Peng, Artyom A. Alekseyenko, Erica Larsch...
BIRD
2008
Springer
141views Bioinformatics» more  BIRD 2008»
13 years 7 months ago
Nested q-Partial Graphs for Genetic Network Inference from "Small n, Large p" Microarray Data
Abstract. Gaussian graphical models are widely used to tackle the important and challenging problem of inferring genetic regulatory networks from expression data. These models have...
Kevin Kontos, Gianluca Bontempi